PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_431CCA490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 298aa    MW: 32058.1 Da    PI: 9.22
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_431CCA490.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.91.4e-32301212102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+++++e++ ++e+iswse+g+sfvv+++ e+a+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++++F++g
  Traes_5DL_431CCA490.1  30 FLTKTHQMVEERGTDEVISWSEHGRSFVVWKPVELARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRRG 108
                            9*****************************************************************99.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +++ll+ i+r+k 
  Traes_5DL_431CCA490.1 109 EQSLLSGIRRRKA 121
                            **********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.85E-3226119IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.2E-3626119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-5426119IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.8E-2930119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-173053IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-176880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-178193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAGAAAQQQK GGSGGGGGAV RVGGGGPAPF LTKTHQMVEE RGTDEVISWS EHGRSFVVWK  60
PVELARDLLP LHFKHCNFSS FVRQLNTYGF RKVVPDRWEF ANENFRRGEQ SLLSGIRRRK  120
ATGTTTPQSS KTCGTGVNVA FPPPLPALPP ASASTSGTGN DHSTSSASSP TRPDLSSENE  180
QLRKDNHALA AELALARRHC EELLGFLSRF LDVRQLDLRL LMDEDMQGAA GGARSADQEH  240
CCEKKVKLFG VVLKDASARK RGRCDEAAAS ERSMKMTRIG EPWVGVPSSC PARCGGGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-201611910129Heat shock factor protein 1
5d5v_B2e-201611910129Heat shock factor protein 1
5d5v_D2e-201611910129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085490.0KF208549.1 Triticum aestivum heat shock factor B1b (HsfB1b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150318.11e-134heat shock factor protein 4
SwissprotQ67TP91e-134HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLM8CUB10.0M8CUB1_AEGTA; Heat stress transcription factor B-1
TrEMBLW5FSP60.0W5FSP6_WHEAT; Uncharacterized protein
STRINGMLOC_57709.11e-170(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-48heat shock factor 4
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]